大家在解析blast2go或者其他GO注释工具返回的结果时,发现有时只有对生物过程的描述或GO号,那么如何查看两者的对应关系呢,我们可以登录GO网站go.obo(下载地址:http://purl.obolibrary.org/obo/go.obo)文件。里面有最全面的goterm和description对应关系的信息。
为了方面查看我把爬出来的部分信息列于table1。完整版地址(https://pan.baidu.com/s/1FHQm_CxEttean0PmrP8_6w 提取码:t25f ); go.obo地址(https://pan.baidu.com/s/19kvhnLGMBDXqcpi6d_qQGA 提取码:bxm6);
当然会用R语言的可以直接用R包:
library(GO.db) # GOlist 就是结果 |
goterms | description |
GO:0000001 | mitochondrion inheritance |
GO:0000002 | mitochondrial genome maintenance |
GO:0000003 | reproduction |
GO:0000006 | high-affinity zinc transmembrane transporter activity |
GO:0000007 | low-affinity zinc ion transmembrane transporter activity |
GO:0000009 | alpha-1,6-mannosyltransferase activity |
GO:0000010 | trans-hexaprenyltranstransferase activity |
GO:0000011 | vacuole inheritance |
GO:0000012 | single strand break repair |
GO:0000014 | single-stranded DNA endodeoxyribonuclease activity |
GO:0000015 | phosphopyruvate hydratase complex |
GO:0000016 | lactase activity |
GO:0000017 | alpha-glucoside transport |
GO:0000018 | regulation of DNA recombination |
GO:0000019 | regulation of mitotic recombination |
GO:0000022 | mitotic spindle elongation |
GO:0000023 | maltose metabolic process |
GO:0000024 | maltose biosynthetic process |
GO:0000025 | maltose catabolic process |
GO:0000026 | alpha-1,2-mannosyltransferase activity |
GO:0000027 | ribosomal large subunit assembly |
GO:0000028 | ribosomal small subunit assembly |
GO:0000030 | mannosyltransferase activity |
GO:0000031 | mannosylphosphate transferase activity |
GO:0000032 | cell wall mannoprotein biosynthetic process |