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linux mpi4py,无法在CentOS 7上安装mpi4py

谭宜
2023-12-01

我有CentOS 7,并安装了mpicc(它可以在C中为openmpi编译)。我还有Python2.7.5,刚刚安装了pip。我运行此命令时遇到以下错误:sudo pip install mpi4py

Collecting mpi4py Using cached mpi4py-2.0.0.tar.gz Installing

> collected packages: mpi4py Running setup.py install for mpi4py ...

> error

> Complete output from command /usr/bin/python2 -u -c "import setuptools,

> tokenize;__file__='/tmp/pip-build-x5jD4O/mpi4py/setup.py';exec(compile(getattr(tokenize,

> 'open', open)(__file__).read().replace('\r\n', '\n'), __file__,

> 'exec'))" install --record /tmp/pip-mpMoZO-record/install-record.txt

> --single-version-externally-managed --compile:

> running install

> running build

> running build_src

> running build_py

> creating build

> creating build/lib.linux-x86_64-2.7

> creating build/lib.linux-x86_64-2.7/mpi4py

> copying src/__main__.py -> build/lib.linux-x86_64-2.7/mpi4py

> copying src/__init__.py -> build/lib.linux-x86_64-2.7/mpi4py

> creating build/lib.linux-x86_64-2.7/mpi4py/include

> creating build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/__init__.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/__init__.pyx -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py

> copying src/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py

> copying src/libmpi.pxd -> build/lib.linux-x86_64-2.7/mpi4py

> running build_clib

> MPI configuration: [mpi] from 'mpi.cfg'

> checking for library 'lmpe' ...

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o

> gcc -pthread _configtest.o -llmpe -o _configtest

> /bin/ld: cannot find -llmpe

> collect2: error: ld returned 1 exit status

> failure.

> removing: _configtest.c _configtest.o

> building 'mpe' dylib library

> creating build/temp.linux-x86_64-2.7

> creating build/temp.linux-x86_64-2.7/src

> creating build/temp.linux-x86_64-2.7/src/lib-pmpi

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/mpe.o

> creating build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi

> gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/mpe.o -o

> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libmpe.so

> checking for library 'vt-mpi' ...

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o

> gcc -pthread _configtest.o -lvt-mpi -o _configtest

> /bin/ld: cannot find -lvt-mpi

> collect2: error: ld returned 1 exit status

> failure.

> removing: _configtest.c _configtest.o

> checking for library 'vt.mpi' ...

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o

> gcc -pthread _configtest.o -lvt.mpi -o _configtest

> /bin/ld: cannot find -lvt.mpi

> collect2: error: ld returned 1 exit status

> failure.

> removing: _configtest.c _configtest.o

> building 'vt' dylib library

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt.o

> gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt.o -o

> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt.so

> checking for library 'vt-mpi' ...

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o

> gcc -pthread _configtest.o -lvt-mpi -o _configtest

> /bin/ld: cannot find -lvt-mpi

> collect2: error: ld returned 1 exit status

> failure.

> removing: _configtest.c _configtest.o

> checking for library 'vt.mpi' ...

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o

> gcc -pthread _configtest.o -lvt.mpi -o _configtest

> /bin/ld: cannot find -lvt.mpi

> collect2: error: ld returned 1 exit status

> failure.

> removing: _configtest.c _configtest.o

> building 'vt-mpi' dylib library

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-mpi.o

> gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-mpi.o -o

> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-mpi.so

> checking for library 'vt-hyb' ...

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o

> gcc -pthread _configtest.o -lvt-hyb -o _configtest

> /bin/ld: cannot find -lvt-hyb

> collect2: error: ld returned 1 exit status

> failure.

> removing: _configtest.c _configtest.o

> checking for library 'vt.ompi' ...

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o

> gcc -pthread _configtest.o -lvt.ompi -o _configtest

> /bin/ld: cannot find -lvt.ompi

> collect2: error: ld returned 1 exit status

> failure.

> removing: _configtest.c _configtest.o

> building 'vt-hyb' dylib library

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-hyb.o

> gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-hyb.o -o

> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-hyb.so

> running build_ext

> MPI configuration: [mpi] from 'mpi.cfg'

> checking for MPI compile and link ...

> gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o

> _configtest.c:2:17: fatal error: mpi.h: No such file or directory

> #include

> ^

> compilation terminated.

> failure.

> removing: _configtest.c _configtest.o

> error: Cannot compile MPI programs. Check your configuration!!!

到目前为止,我尝试了所有的解决方案,但似乎都不管用,请问有人知道这个问题吗?谢谢你

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