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基因数据处理70之Picard安装没成功

干旺
2023-12-01

1.下载:

https://github.com/broadinstitute/picard.git

2.安装:

hadoop@Master:~/xubo/tools/picard$ ant clone-htsjdk
Buildfile: /home/hadoop/xubo/tools/picard/build.xml

clone-htsjdk:
     [exec] Cloning into 'htsjdk'...
     [echo] Checking out HTSJDK tagged version [2.4.1]
     [exec] Note: checking out '2.4.1'.
     [exec] 
     [exec] You are in 'detached HEAD' state. You can look around, make experimental
     [exec] changes and commit them, and you can discard any commits you make in this
     [exec] state without impacting any branches by performing another checkout.
     [exec] 
     [exec] If you want to create a new branch to retain commits you create, you may
     [exec] do so (now or later) by using -b with the checkout command again. Example:
     [exec] 
     [exec]   git checkout -b new_branch_name
     [exec] 
     [exec] HEAD is now at 52df499... Merge pull request #615 from samtools/dr_disable_intel_gkl

BUILD SUCCESSFUL
Total time: 34 minutes 17 seconds
hadoop@Master:~/xubo/tools/picard$ ant
Buildfile: /home/hadoop/xubo/tools/picard/build.xml

write-version-property:
[propertyfile] Creating new property file: /home/hadoop/xubo/tools/picard/htsjdk/htsjdk.version.properties

set-htsjdk-version:

compile-htsjdk:
     [exec] :compileJava FAILED
     [exec] 
     [exec] FAILURE: Build failed with an exception.
     [exec] 
     [exec] * What went wrong:
     [exec] Execution failed for task ':compileJava'.
     [exec] > invalid source release: 1.8
     [exec] 
     [exec] * Try:
     [exec] Run with --stacktrace option to get the stack trace. Run with --info or --debug
     [exec] BUILD FAILED
     [exec] 
     [exec] Total time: 26.918 secs
     [exec]  option to get more log output.
     [exec] Result: 1

BUILD FAILED
/home/hadoop/xubo/tools/picard/build.xml:174: /home/hadoop/xubo/tools/picard/htsjdk/build/libs does not exist.

Total time: 47 seconds
hadoop@Master:~/xubo/tools/picard$ 
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